PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC03G27170.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 299aa    MW: 31864.3 Da    PI: 4.5542
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC03G27170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.37.6e-17200236135
             GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C+nCgt++  Tp +Rrgp g++tLCnaCGl+++ kg+
  OPUNC03G27170.1 200 CQNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANKGT 236
                      **********************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009796.8E-105994IPR010399Tify domain
PROSITE profilePS5132014.6985994IPR010399Tify domain
PfamPF062002.1E-126293IPR010399Tify domain
PROSITE profilePS5101713.235128170IPR010402CCT domain
PfamPF062031.9E-14128168IPR010402CCT domain
PROSITE profilePS501148.8194253IPR000679Zinc finger, GATA-type
SMARTSM004013.8E-10194247IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-11197244No hitNo description
Gene3DG3DSA:3.30.50.106.7E-14199238IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.44E-16199254No hitNo description
PROSITE patternPS003440200227IPR000679Zinc finger, GATA-type
PfamPF003202.0E-14200236IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MPDAAAADAV MRDAPATAAG GGGGDDDDDG DDDTKEEDDD DEGEEEEPAA APEPVSALLP  60
GSPNQLTLLF QGEVYVFESV TPEKVQAVLL LLGSSELSPG LANMVLPNQH ENRGYDDLLQ  120
RTDIPAKRVA SLIRFREKRK ERNFDKKIRY AIRKEVALRM QRRKGQFAGR ANMEGESLSP  180
GCEPASQGSG QDFPSRESKC QNCGTSEKMT PAMRRGPAGP RTLCNACGLM WANKGTLRSC  240
PKAKVESSVV ATEQSGIDNK ALVVPNPDNI TTASHGEAMG GDNSPANEAE IGAPKAHSQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1050250.0AK105025.2 Oryza sativa Japonica Group cDNA clone:001-011-G08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628049.11e-165PREDICTED: GATA transcription factor 18
SwissprotQ10F251e-167GAT18_ORYSJ; GATA transcription factor 18
TrEMBLA0A0E0KHI30.0A0A0E0KHI3_ORYPU; Uncharacterized protein
STRINGORGLA01G0401200.11e-165(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.25e-59ZIM-like 1